hammerlab / adam / 56
85%
master: 78%

LAST BUILD BRANCH: 0.23.2
DEFAULT BRANCH: master
Ran
Jobs 1
Files 129
Run time 9s
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Merge pull request #12 from ryan-williams/paths

merge in upstream, use hammerlab.paths.Path

1378 of 1378 new or added lines in 53 files covered. (100.0%)

4739 of 5577 relevant lines covered (84.97%)

0.85 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
94.27
 2.38% src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
90.0
 -10.0% src/main/scala/org/bdgenomics/adam/rdd/OutFormatter.scala
1
97.22
 97.22% src/main/scala/org/bdgenomics/adam/rdd/read/recalibration/DinucCovariate.scala
1
87.5
 src/main/scala/org/bdgenomics/adam/rdd/read/recalibration/Observation.scala
2
45.45
 -0.26% src/main/scala/org/bdgenomics/adam/rdd/TreeRegionJoin.scala
2
84.91
 -1.09% src/main/scala/org/bdgenomics/adam/rdd/feature/CoverageRDD.scala
2
92.59
 -0.74% src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
2
99.2
 -0.8% src/main/scala/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.scala
3
90.32
 src/main/scala/org/bdgenomics/adam/rdd/read/recalibration/CovariateSpace.scala
3
90.52
 0.41% src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
4
85.71
 10.35% src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
4
92.31
 92.31% src/main/scala/org/bdgenomics/adam/rdd/read/recalibration/BaseQualityRecalibration.scala
5
89.36
 -10.64% src/main/scala/org/bdgenomics/adam/rdd/FileMerger.scala
5
72.86
 0.13% src/main/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentRDD.scala
5
86.73
 -0.77% src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureRDD.scala
7
95.4
 10.89% src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
8
0.0
 0.0% src/main/scala/org/bdgenomics/adam/util/ParquetFileTraversable.scala
10
82.76
 82.76% src/main/scala/org/bdgenomics/adam/models/SnpTable.scala
11
69.44
 -30.56% src/main/scala/org/bdgenomics/adam/util/ReferenceContigMap.scala
17
82.08
 0.27% src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
23
69.57
 -0.99% src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
29
63.75
 src/main/scala/org/bdgenomics/adam/rdd/ParallelFileMerger.scala
56
76.24
 1.6% src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
62.34
 1.3% src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
1
84.99
 0.0% src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
1
97.2
 0.0% src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
1
80.34
 -0.85% src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
82.08
 0.27% src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
1
69.57
 -0.99% src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
1
82.61
 3.58% src/main/scala/org/bdgenomics/adam/rich/RichAlignmentRecord.scala
1
91.11
 11.11% src/main/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtils.scala
1
64.29
 -7.14% src/main/scala/org/bdgenomics/adam/projections/Projection.scala
1
62.16
 -2.7% src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
96.23
 -1.89% src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
80.0
 0.0% src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
94.27
 2.38% src/main/scala/org/bdgenomics/adam/models/MdTag.scala
2
57.5
 0.0% src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
2
90.91
 -2.02% src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
2
88.24
 0.98% src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
2
69.23
 0.0% src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
3
83.64
 1.82% src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
5
76.24
 1.6% src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
7 56.7 (vars="") 129
84.97
 Travis Job 56.7
Source Files on build 56
Coverage ∆ File Lines Relevant Covered Missed Hits/Line