hammerlab / adam / 47
85%
master: 78%

LAST BUILD BRANCH: 0.23.2
DEFAULT BRANCH: master
Ran
Jobs 6
Files 114
Run time 7min
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Merge pull request #11 from ryan-williams/tests

build/test improvements

73 of 73 new or added lines in 12 files covered. (100.0%)

4120 of 5168 relevant lines covered (79.72%)

4.78 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
2
70.56
 0.5% src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
3
66.67
 -10.26% src/main/scala/org/bdgenomics/adam/algorithms/consensus/ConsensusGeneratorFromKnowns.scala
3
74.63
 1.51% src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
4
84.52
 -2.47% src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
82.14
 -3.57% src/main/scala/org/bdgenomics/adam/rdd/read/ReferencePositionPair.scala
1
80.0
 -6.67% src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
84.52
 -2.47% src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
43.64
 0.0% src/main/scala/org/bdgenomics/adam/rich/DecadentRead.scala
1
98.11
 -1.89% src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
75.36
 -1.45% src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
88.24
 -5.88% src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
1
70.56
 0.5% src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
1
97.2
 -0.93% src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
1
57.5
 -0.73% src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
2
69.23
 1.92% src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
2
81.82
 1.82% src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
3
84.99
 -0.02% src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
3
81.82
 -0.91% src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
6
61.04
 -3.9% src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
Jobs
ID Job ID Ran Files Coverage
1 47.1 (vars="-Dhadoop.version=2.3.0 -Dspark.version=1.6.3") 114
79.72
 Travis Job 47.1
2 47.2 (vars="-Dhadoop.version=2.3.0 -Dspark.version=2.0.2") 114
79.72
 Travis Job 47.2
3 47.3 (vars="-Dhadoop.version=2.3.0 -Dspark.version=2.1.0") 114
79.72
 Travis Job 47.3
4 47.4 (vars="-Dhadoop.version=2.6.0 -Dspark.version=1.6.3") 114
79.72
 Travis Job 47.4
5 47.5 (vars="-Dhadoop.version=2.6.0 -Dspark.version=2.0.2") 114
79.72
 Travis Job 47.5
6 47.6 (vars="-Dhadoop.version=2.6.0 -Dspark.version=2.1.0") 114
79.72
 Travis Job 47.6
Source Files on build 47
Coverage ∆ File Lines Relevant Covered Missed Hits/Line