hammerlab / adam / 55
85%
master: 78%

LAST BUILD BRANCH: 0.23.2
DEFAULT BRANCH: master
Ran
Jobs 1
Files 129
Run time 17s
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst
55

Pull #12

travis-ci

web-flow 
fix travis coveralls-disabling
Pull Request #12: merge in upstream, use hammerlab.paths.Path

1378 of 1378 new or added lines in 53 files covered. (100.0%)

4739 of 5577 relevant lines covered (84.97%)

0.85 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
100.0
 src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
100.0
 src/main/scala/org/bdgenomics/adam/rdd/OutFormatter.scala
1
100.0
 src/main/scala/org/bdgenomics/adam/rdd/read/recalibration/DinucCovariate.scala
1
100.0
 src/main/scala/org/bdgenomics/adam/rdd/read/recalibration/Observation.scala
2
100.0
 src/main/scala/org/bdgenomics/adam/rdd/TreeRegionJoin.scala
2
100.0
 src/main/scala/org/bdgenomics/adam/rdd/feature/CoverageRDD.scala
2
100.0
 src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
2
100.0
 src/main/scala/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.scala
3
100.0
 src/main/scala/org/bdgenomics/adam/rdd/read/recalibration/CovariateSpace.scala
3
100.0
 src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
4
100.0
 src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
4
100.0
 src/main/scala/org/bdgenomics/adam/rdd/read/recalibration/BaseQualityRecalibration.scala
5
100.0
 src/main/scala/org/bdgenomics/adam/rdd/FileMerger.scala
5
100.0
 src/main/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentRDD.scala
5
100.0
 src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureRDD.scala
7
100.0
 src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
8
100.0
 src/main/scala/org/bdgenomics/adam/util/ParquetFileTraversable.scala
10
100.0
 src/main/scala/org/bdgenomics/adam/models/SnpTable.scala
11
100.0
 src/main/scala/org/bdgenomics/adam/util/ReferenceContigMap.scala
17
100.0
 src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
23
100.0
 src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
29
100.0
 src/main/scala/org/bdgenomics/adam/rdd/ParallelFileMerger.scala
56
100.0
 src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
100.0
 src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
1
100.0
 src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
1
100.0
 src/main/scala/org/bdgenomics/adam/rich/RichAlignmentRecord.scala
1
100.0
 src/main/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtils.scala
1
100.0
 src/main/scala/org/bdgenomics/adam/projections/Projection.scala
1
100.0
 src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
100.0
 src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
100.0
 src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
100.0
 src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
100.0
 src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
1
100.0
 src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
1
100.0
 src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
100.0
 src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
2
100.0
 src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
2
100.0
 src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
2
100.0
 src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
2
100.0
 src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
3
100.0
 src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
5
100.0
 src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
7 55.7 (vars="") 0
84.97
 Travis Job 55.7
Source Files on build 55
Detailed source file information is not available for this build.