bigdatagenomics / adam / 1888
81%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 143
Run time 1min
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1888

Pull #1423

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/dd77c7bec09b44070db8011db77e74d3fa7b210d">dd77c7bec<a href="https://github.com/bigdatagenomics/adam/commit/dd77c7bec09b44070db8011db77e74d3fa7b210d">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/51a8ce23ea02d623c208de782e99c77d852bf6f8">51a8ce23e</a>">51a8ce23e</a><a href="https://github.com/bigdatagenomics/adam/commit/dd77c7bec09b44070db8011db77e74d3fa7b210d"> into cf39e6cbf">cf39e6cbf</a>
Pull Request #1423: BQSR refactor for perf improvements

308 of 308 new or added lines in 16 files covered. (100.0%)

4645 of 5742 relevant lines covered (80.9%)

6.46 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
97.22
 97.22% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/recalibration/DinucCovariate.scala
3
90.32
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/recalibration/CovariateSpace.scala
4
81.47
 -1.14% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
4
92.31
 92.31% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/recalibration/BaseQualityRecalibration.scala
7
56.21
 1.24% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
10
83.05
 83.05% adam-core/src/main/scala/org/bdgenomics/adam/models/SnpTable.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
59.46
 -2.7% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
82.61
 3.58% adam-core/src/main/scala/org/bdgenomics/adam/rich/RichAlignmentRecord.scala
1
56.21
 1.24% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
1
75.47
 3.77% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
1
89.9
 -1.01% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
96.63
 3.37% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
91.35
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
67.31
 1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
86.67
 6.67% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
98.89
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
1
70.05
 0.51% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
2
64.94
 2.6% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
2
81.47
 -1.14% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
2
87.0
 -2.0% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
2
95.45
 -3.03% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
2
85.3
 0.15% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2
90.1
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
3
76.47
 -4.41% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
5
80.73
 -3.67% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
11
73.52
 -1.8% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 1888.1 241
80.72
2 1888.2 241
80.74
3 1888.3 241
80.74
4 1888.4 241
80.84
5 1888.5 241
80.83
6 1888.6 241
80.72
7 1888.7 241
80.84
8 1888.8 241
80.83
Source Files on build 1888
Coverage ∆ File Lines Relevant Covered Missed Hits/Line