bigdatagenomics / adam / 1829
82%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 133
Run time 1min
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1829

Pull #1412

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/d5e5082e38a961a7b925f2ce928bdb1ee6c8955b">d5e5082e3<a href="https://github.com/bigdatagenomics/adam/commit/d5e5082e38a961a7b925f2ce928bdb1ee6c8955b">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/fe8a2f2419f57dc80cc8e893116d3c832969861b">fe8a2f241</a>">fe8a2f241</a><a href="https://github.com/bigdatagenomics/adam/commit/d5e5082e38a961a7b925f2ce928bdb1ee6c8955b"> into eb4aa6ce8">eb4aa6ce8</a>
Pull Request #1412: INDEL realigner cleanup

205 of 205 new or added lines in 10 files covered. (100.0%)

4419 of 5726 relevant lines covered (77.17%)

6.16 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
94.82
 2.39% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
81.74
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
4
82.54
 6.07% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
6
54.8
 -0.17% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
12
93.5
 8.98% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
75.0
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
69.54
 0.51% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
1
93.5
 8.98% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
60.76
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
94.19
 1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
87.95
 -1.2% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastqRecordConverter.scala
1
85.12
 0.31% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2
95.51
 -1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
2
90.1
 1.98% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
2
69.23
 -1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
2
62.34
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
2
87.5
 -2.27% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
2
41.82
 -1.82% adam-core/src/main/scala/org/bdgenomics/adam/rich/DecadentRead.scala
2
91.67
 -4.17% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
4
78.9
 -2.75% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
6
94.82
 2.39% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
9
81.74
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
9
74.55
 -0.26% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
51
54.8
 -0.17% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
Jobs
ID Job ID Ran Files Coverage
1 1829.1 236
77.03
2 1829.2 236
77.03
3 1829.3 236
77.02
4 1829.4 236
77.02
5 1829.5 236
77.09
6 1829.6 236
77.07
7 1829.7 236
77.09
8 1829.8 236
77.07
Source Files on build 1829
Coverage ∆ File Lines Relevant Covered Missed Hits/Line