Blahah / transrate / 85

Builds Branch Commit Type Ran Committer Via Coverage
85 master tidy up dependency versioning push Blahah travis-ci pending completion   set done
84 master raise appropriate errors if input files not found push Blahah travis-ci pending completion   set done
83 master log when writing to file push Blahah travis-ci pending completion   set done
82 master log all lines in CLI to logger push Blahah travis-ci pending completion   set done
81 master more debugging for each_with_coverage push Blahah travis-ci pending completion   set done
80 master explicit debug log for Assembly#each_with_coverage push Blahah travis-ci pending completion   set done
79 master migrate bin to new logger push Blahah travis-ci pending completion   set done
78 master move to using the clevel Yell global logger push Blahah travis-ci pending completion   set done
76 master use symbols for loglevel push Blahah travis-ci pending completion   set done
75 master add yell dependency, fix failed attempt to include module in class push Blahah travis-ci pending completion   set done
74 master expose logger in cli push Blahah travis-ci pending completion   set done
73 master include singleton, define module method properly push Blahah travis-ci pending completion   set done
71 master don't recreate bowtie2 index if it already exists push Blahah travis-ci pending completion   set done
70 master simplify assembly basic stats by removing some old threading code push Blahah travis-ci pending completion   set done
69 master wider cmdline report push Blahah travis-ci pending completion   set done