Blahah / transrate / 157

Builds Branch Commit Type Ran Committer Via Coverage
157 master fix tests for new orf calculation and definition of good mapping Pull #88 cboursnell travis-ci pending completion   set done
156 master Merge pull request #87 from cboursnell/master Massive speed up of bcf file parsing using C push Blahah travis-ci pending completion   set done
155 master adding multithreading to samtools sort Pull #87 cboursnell travis-ci pending completion   set done
153 master report score metrics push Blahah travis-ci pending completion   set done
152 master Singleton: a feature that allows singleton reads to be written to file. Removed unaligned transcript feature and merged changes from upstream Pull #85 MatthewRalston travis-ci pending completion   set done
151 master Merged changes from upstream into stranded Pull #84 MatthewRalston travis-ci pending completion   set done
150 master added minor change from upstream: comma separated list of reads Pull #83 MatthewRalston travis-ci pending completion   set done
149 master Merge pull request #81 from cboursnell/master Check for existence of files before running samtools commands push Blahah travis-ci pending completion   set done
148 master Merged upstream changes into unpaired Pull #65 MatthewRalston travis-ci pending completion   set done
147 master fixed coverage variance Pull #81 cboursnell travis-ci pending completion   set done
146 master hopefully fix coverage variance NaN bug Pull #81 cboursnell travis-ci pending completion   set done
145 master check for existence of files before running samtools commands Pull #81 cboursnell travis-ci pending completion   set done
144 master minimise hash lookups during sam processing push Blahah travis-ci pending completion   set done
143 master remove dependency on bio-samtools push Blahah travis-ci pending completion   set done
142 master minor formatting push Blahah travis-ci pending completion   set done