hall-lab / svtools / 404

Builds Branch Commit Type Ran Committer Via Coverage
404 develop Remove unused import Pull #235 web-flow travis-ci pending completion   set done
403 develop Merge pull request #238 from ernfrid/chromosome_parsing Allow BND alts with colons to be parsed. Fixes #236. push web-flow travis-ci pending completion   set done
402 develop Use single function for all BND alt parsing Pull #238 web-flow travis-ci pending completion   set done
401 develop Set entire sample to missing CN if cnvnator fails This happens on a chromosome or sample basis. See https://github.com/abyzovlab/CNVnator/issues/83 Previously we simply died which results in truncated files and headaches. At this point in time f... Pull #235 web-flow travis-ci pending completion   set done
400 develop Use SNAME for weighting instead of SNAME1 Pull #234 web-flow travis-ci pending completion   set done
399 develop Merge pull request #232 from ernfrid/exception_handling Re-raise IOErrors that aren't SIGPIPE push web-flow travis-ci pending completion   set done
398 develop Re-raise IOErrors that aren't SIGPIPE Pull #232 web-flow travis-ci pending completion   set done
397 develop Change to new style classes push ernfrid travis-ci pending completion   set done
396 develop Merge pull request #230 from ernfrid/breakpoint_cleanup Breakpoint cleanup push web-flow travis-ci pending completion   set done
395 develop Update lmerge to account for Breakpoint changes Pull #230 web-flow travis-ci pending completion   set done
394 develop Merge pull request #229 from ernfrid/bedpetovcf_manta Ensure we can reconstruct a Manta bedpe push web-flow travis-ci pending completion   set done
393 develop Ensure we can reconstruct a Manta bedpe This introduces tests to ensure we reconstruct a Manta bedpe file and fixes an issue where positions were being encoded incorrectly in Manta bedpes. Fixes #93. Pull #229 web-flow travis-ci pending completion   set done
392 develop Merge pull request #221 from ernfrid/sname_tests Better tag matching in bedpe push web-flow travis-ci pending completion   set done
391 develop Merge pull request #228 from ernfrid/prune_fix_issue226 Fix duplicate line bug in prune. push web-flow travis-ci pending completion   set done
390 develop Fix duplicate line bug in prune. This likely also caused erroneous results that didn't contain duplicate lines. We no longer delete from the list we're iterating over. Fixes #226 Pull #228 web-flow travis-ci pending completion   set done