1085

Builds	Branch	Commit	Type	Ran	Committer	Via	Coverage
1085	develop	gapfill: Set reasonable intergrality tolerance and warn otherwise With this change, the gapfind/gapfill procedures will change the integrality tolerance to a reasonable value based on v_max and epsilon. If the calculated integrality tolerance is ...	Pull #154	15 Nov 2016 10:14PM UTC	web-flow	travis-ci	pending completion set done
1084	develop	Merge pull request #166 from jonls/lp-tolerances LP tolerances	push	15 Nov 2016 10:12PM UTC	web-flow	travis-ci	pending completion set done
1083	develop	qsoptex: Implement simplex tolerance properties	Pull #166	15 Nov 2016 10:08PM UTC	web-flow	travis-ci	pending completion set done
1082	develop	gapfill: Set reasonable intergrality tolerance and warn otherwise With this change, the gapfind/gapfill procedures will change the integrality tolerance to a reasonable value based on v_max and epsilon. If the calculated integrality tolerance is ...	Pull #154	15 Nov 2016 10:07PM UTC	web-flow	travis-ci	pending completion set done
1081	develop	cplex: Provide read-write property for integrality tolerance	Pull #166	15 Nov 2016 09:39PM UTC	web-flow	travis-ci	pending completion set done
1080	develop	gapfill: Set reasonable intergrality tolerance and warn otherwise With this change, the gapfind/gapfill procedures will change the integrality tolerance to a reasonable value based on v_max and epsilon. If the calculated integrality tolerance is ...	Pull #154	15 Nov 2016 09:38PM UTC	web-flow	travis-ci	pending completion set done
1079	develop	Merge pull request #165 from jonls/reformulate-gapfill gapfill: Reformulate GapFind/GapFill	push	15 Nov 2016 09:35PM UTC	web-flow	travis-ci	pending completion set done
1078	develop	gapfill: Allow reactions to be excluded from gap-filling The biomass reaction will be excluded because the gap-filling would otherwise often be able to reverse the direction of the biomass reaction to fill all gaps. This is not a desirable solution.	Pull #165	15 Nov 2016 09:32PM UTC	web-flow	travis-ci	pending completion set done
1077	develop	gapfill: Reformulate GapFind/GapFill Changes procedure so that epsilon indicates the flux threshold instead of the compound production threshold. In addition, instead of trying to make irreversible reactions reversible, the procedure will more ge...	Pull #165	15 Nov 2016 09:28PM UTC	web-flow	travis-ci	pending completion set done
1076	develop	Merge pull request #164 from jonls/test-gapfill Extend tests of gapfill command	push	15 Nov 2016 09:22PM UTC	web-flow	travis-ci	pending completion set done
1075	develop	Extend tests of gapfill command	Pull #164	15 Nov 2016 09:20PM UTC	web-flow	travis-ci	pending completion set done
1074	develop	Merge pull request #163 from jonls/gapfill-output-all gapfill: Improve output by listing all reactions	push	15 Nov 2016 08:54PM UTC	web-flow	travis-ci	pending completion set done
1073	develop	gapfill: Improve output by listing all reactions List all model reactions with an indication that they are already in the model. Then, list any added or reversed reactions alphabetically by ID. This makes the output more similar to the fastgapfil...	Pull #163	15 Nov 2016 08:44PM UTC	web-flow	travis-ci	pending completion set done
1072	develop	Merge pull request #162 from jonls/fix-gapfill-vmax Use default flux value as v_max for GapFind/GapFill	push	15 Nov 2016 08:41PM UTC	web-flow	travis-ci	pending completion set done
1071	develop	gapfill: Use default flux value as big-M for GapFind/GapFill	Pull #162	15 Nov 2016 08:38PM UTC	web-flow	travis-ci	pending completion set done

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