PeteHaitch / methsim / 102

Builds	Branch	Commit	Type	Ran	Committer	Via	Coverage
102	master	Fix bug where uninitialised value of list was accessed; remember, C++ is zero-indexed!	push	25 Apr 2015 01:24PM UTC	PeteHaitch	travis-ci	pending completion   set done
101	master	Fix typo in DESCRIPTION	push	24 Apr 2015 07:01AM UTC	PeteHaitch	travis-ci	pending completion   set done
98	master	Simplify asMethPat() in light of changes to SimulatedBS class.	push	17 Apr 2015 01:24AM UTC	PeteHaitch	travis-ci	pending completion   set done
97	master	Remove no longer required .cpp files and associated code.	push	16 Apr 2015 12:35PM UTC	PeteHaitch	travis-ci	pending completion   set done
96	master	Fix error check in .simulatez(). Simplify 'simplify'-related code of simulate,BSParam-method.	push	16 Apr 2015 11:25AM UTC	PeteHaitch	travis-ci	pending completion   set done
95	master	Update simulate,BSParam-method to handle MixtureWeights. Update return object when simplify > 0 to be a single MethPat object with all nsim samples.	push	16 Apr 2015 05:16AM UTC	PeteHaitch	travis-ci	pending completion   set done
94	master	Fix passing of dots to .sampleComethDT()	push	16 Apr 2015 01:08AM UTC	PeteHaitch	travis-ci	pending completion   set done
93	master	Remove comethylation_function argument from simulate,MethylomeParam-method.	push	15 Apr 2015 11:59AM UTC	PeteHaitch	travis-ci	pending completion   set done
91	master	Continue switch from "1" classes/methods to classes/methods based on "2" classes. Remove SimulateBSParam class, simulate,SimulateBSParam-method, simulate2,SimulateBSParam2-method. Introduce BSParam class and simulate,BSParam-method (incomplete).	push	15 Apr 2015 10:21AM UTC	PeteHaitch	travis-ci	pending completion   set done
89	master	Moved notes to notes.Rmd and TODOs to TODOs.Rmd	push	14 Apr 2015 01:16PM UTC	PeteHaitch	travis-ci	pending completion   set done
88	master	Fix construction of MethPat object when simplify > 0 in simulate2,SimulateBSParam2-method.	push	14 Apr 2015 12:47AM UTC	PeteHaitch	travis-ci	pending completion   set done
87	master	Export .makePosAndCounts() helper function. Re-factor simulate2,SimulateBSParam2-method to use bplapply() rather than bpmapply().	push	11 Apr 2015 06:12AM UTC	PeteHaitch	travis-ci	pending completion   set done
86	master	Bug fixes to simulate2,SimulateBSParam-method.	push	11 Apr 2015 05:10AM UTC	PeteHaitch	travis-ci	pending completion   set done
85	master	Add simplify argument to simulate2,SimulateBSParam-method.	push	11 Apr 2015 04:15AM UTC	PeteHaitch	travis-ci	pending completion   set done
84	master	Fix bug in computing hit (h) in .simulatez().	push	11 Apr 2015 02:18AM UTC	PeteHaitch	travis-ci	pending completion   set done

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