broadinstitute / hellbender / 340

Builds Branch Commit Type Ran Committer Via Coverage
340 lb_improve_parsing_errors address matts comment and add additional test push lbergelson travis-pro pending completion   set done
339 ak_bqsr_part2 The rest of BQSR : BaseRecalibrator, AnalyzeCovariates, ApplyBQSR (replacememt for using PrintReads to Apply BQSR) push akiezun travis-pro pending completion   set done
338 ak_bqsr_part2 comparison push akiezun travis-pro pending completion   set done
336 ak_bqsr_part2 HACK for compare bams as sams push akiezun travis-pro pending completion   set done
335 master Merge pull request #171 from broadinstitute/mds_fix_picard_issues Move CompareSAMs and various unit test improvements push akiezun travis-pro pending completion   set done
334 master adding trivial tests for a few uncovered methods deleting a few methods with have been deprecated by java 8 removed getCigarOperatorForAllBases it is only used in CountReadEvents which isn't coming over remove getBothReadToLociMappings() which... Pull #174 lbergelson travis-pro pending completion   set done
328 master outputting much friendlier command line error messages Pull #173 lbergelson travis-pro pending completion   set done
327 lb_improve_parsing_errors outputting much friendlier command line error messages push lbergelson travis-pro pending completion   set done
326 lb_improve_parsing_errors outputting much friendlier command line error messages push lbergelson travis-pro pending completion   set done
322 mds_fix_picard_issues Move CompareSAMs and various unit test improvements push mattsooknah travis-pro pending completion   set done
323 lb_minor_utils_cleanups adding trivial tests for a few uncovered methods deleting a few methods with have been deprecated by java 8 removed getCigarOperatorForAllBases it is only used in CountReadEvents which isn't coming over remove getBothReadToLociMappings() which... push lbergelson travis-pro pending completion   set done
320 master Merge pull request #172 from broadinstitute/lb_update_to_central_htsjdk updating to maven central htsjdk push akiezun travis-pro pending completion   set done
319 master changing to maven-central version of htsjdk upgraded from 1.127 t0 1.128 removed the local repo entirely Pull #172 lbergelson travis-pro pending completion   set done
318 lb_update_to_central_htsjdk changing to maven-central version of htsjdk upgraded from 1.127 t0 1.128 removed the local repo entirely push lbergelson travis-pro pending completion   set done
317 lb_update_to_central_htsjdk changing to maven-central version of htsjdk upgraded from 1.127 t0 1.128 removed the local repo entirely push lbergelson travis-pro pending completion   set done