broadinstitute / hellbender / 878

Builds Branch Commit Type Ran Committer Via Coverage
878 master Output log messages during engine operations that may be time-consuming. This includes general engine initialization, interval processing, and SAM/BAM reader querying. Also remove puzzling "FRED" prefix from our log output :) Resolves #250 Pull #360 droazen travis-pro pending completion   set done
877 dr_output_logging_messages_during_engine_initialization Output log messages during engine operations that may be time-consuming. This includes general engine initialization, interval processing, and SAM/BAM reader querying. Also remove puzzling "FRED" prefix from our log output :) Resolves #250 push droazen travis-pro pending completion   set done
876 dr_output_logging_messages_during_engine_initialization Output log messages during engine operations that may be time-consuming. This includes general engine initialization, interval processing, and SAM/BAM reader querying. Resolves #250 push droazen travis-pro pending completion   set done
875 master Merge pull request #357 from broadinstitute/ak_bqsr_NPE fix and test for missing contig in seq dict push droazen travis-pro pending completion   set done
874 master Merge pull request #356 from broadinstitute/ak_bqsr_multiple_site_lists testing 2 inputs in BaseRecalibrator push droazen travis-pro pending completion   set done
873 master fix and test for missing contig in seq dict Pull #357 akiezun travis-pro pending completion   set done
872 ak_bqsr_NPE fix and test for missing contig in seq dict push akiezun travis-pro pending completion   set done
870 master testing 2 inputs in BaseRecalibrator Pull #356 akiezun travis-pro pending completion   set done
869 ak_bqsr_multiple_site_lists testing 2 inputs in BaseRecalibrator push akiezun travis-pro pending completion   set done
867 master Merge pull request #343 from broadinstitute/lb_return_values Improving output of completed tools push lbergelson travis-pro pending completion   set done
865 lb_return_values Improving tool output and return values surpressing tool output statement if the tool returned null exiting with 2 if the tool threw a UserException exiting with 1 if the tool threw any other Exception push lbergelson travis-pro pending completion   set done
866 master Improving tool output and return values surpressing tool output statement if the tool returned null exiting with 2 if the tool threw a UserException exiting with 1 if the tool threw any other Exception Pull #343 lbergelson travis-pro pending completion   set done
864 ak_vqsr_tranches 100% testing coverage for ApplyBQSR Pull #354 akiezun travis-pro pending completion   set done
863 ak_apply_vqsr_onTranchesBranch 100% testing coverage for ApplyBQSR push akiezun travis-pro pending completion   set done
862 master Unit and Integration tests for new read counting tool. Pull #353 vruano travis-pro pending completion   set done