starius / lua-npge / 79

Builds Branch Commit Type Ran Committer Via Coverage
79 master use Lua userdata to store temp data in C A memory can be allocated with malloc, but then it can be not freed because of Lua errors triggered (luaL_check*) because of errors in user input, for example. The following malloc's were replaced with us... push starius travis-ci pending completion   set done
78 master alignment.identity returns 0 on empty input * empty list of rows, or * row's length is 0 push starius travis-ci pending completion   set done
77 master good_subblocks: test extending identical group push starius travis-ci pending completion   set done
76 master fix memory leak in identity.c use lua_newuserdata instead of malloc/free push starius travis-ci pending completion   set done
74 master test anchor against shifted row, long anchor push starius travis-ci pending completion   set done
73 master anchor: test works if no anchor and rows are long push starius travis-ci pending completion   set done
72 master implement alignment.anchor in C push starius travis-ci pending completion   set done
71 master alignment.anchor returns nil if rows list is empty push starius travis-ci pending completion   set done
70 master add tests for alignment.left push starius travis-ci pending completion   set done
69 master implement alignment.left in C push starius travis-ci pending completion   set done
68 master fix Lua version of move_identical (failed against empty rows list) push starius travis-ci pending completion   set done
66 master implement move_identical in C push starius travis-ci pending completion   set done
65 master travis: apt-get update push starius travis-ci pending completion   set done
63 master PrimaryHits: blast's query != bank PrimaryHits's goal is to find orthologous blocks, which are located between genomes. That is why hits from a genome to the same genome (repeats) are not needed at this step. push starius travis-ci pending completion   set done
62 master fix sequence name collision in BlastHitsUnwound Sequences from bank and from query got same names like "consensus0001", "consensus0002", ... push starius travis-ci pending completion   set done