st-bender / sciapy / 82

Builds Branch Commit Type Ran Committer Via Coverage
82 master regress: Fix proxy reader tests Astropy 2's time module (Python 2.7) doesn't have `.strftime()` but should have the `out_subfmt` argument to the `Time` initializer. So we use that to find the date index when testing if the proxy table reading was... push st-bender travis-ci pending completion   set done
81 master regress: Expand tilde in proxy path cli arguments We wrap the proxy file argument in `os.path.expanduser()` to get filenames starting with a tilde to work as command line arguments. Pandas seems to have done that for us previously. push st-bender travis-ci pending completion   set done
80 master regress: More proxy data loading tests Checks the loaded proxy values for a few sample dates and checks that julian epoch and (modified) julian days match. Reorganizes the tests slightly by separating Lyman-alpha and AE. Probably not the most ele... push st-bender travis-ci pending completion   set done
79 master regress: Adjust lifetime timing for julian days Julian epoch and Julian days have a slight phase shift. To be able to use our on the Julian epoch trained parameters also in other cases, we adjust the seasonal cycle for the proxy lifetime calculat... push st-bender travis-ci pending completion   set done
78 master regress: Use class variable for lifetime time step Uses the class variable for the lifetime timestep, makes it much easier to calculate and adjust than setting it in the function call. push st-bender travis-ci pending completion   set done
77 master regress: Don't use single thread pool for MCMC Python 2.7 and 3.4 (on travis) don't seem to like pickling the probability function for the MCMC sampler. Pickling is used by the multiprocessing Pool that we unconditionally used whether we use mult... push st-bender travis-ci pending completion   set done
76 master regress: Fix celerite gradients Celerite needs `autograd` for its gradient calculation: ImportError: 'autograd' must be installed to compute gradients Since we use "l-bfgs-b" for fitting and the celerite provided jacobian, we also depend on aut... push st-bender travis-ci pending completion   set done
73 master regress: Try to fix Python 2 compatibility Python 2.7 and 3.4 apparently don't like the twice double star unpacking when passing keyword arguments to functions. We try to fix that by making a copy of the original keyword arguments and updating th... push st-bender travis-ci pending completion   set done
72 master regress: Update generated tutorial notebook .rst Propagates the class name change to the generated notebook .rst files for readthedocs. push st-bender travis-ci pending completion   set done
71 master regress: Default proxy loader fix Uses our package name instead of "__name__" in `resource_filename()` to find the default proxy data files. Using the actual name means that we can omit the upwards dots ".." in the file names but still need the f... push st-bender travis-ci pending completion   set done
70 master regress: Clean up WAIC and LOO Separates the distributed probability calculations into smaller functions to clean up the main WAIC and LOO function. Uses dask.bag to distibute the calculations to the dask cluster which seems more stable than the... push st-bender travis-ci pending completion   set done
69 master regress: Move clean up in WAIC and LOO Cleans up, i.e. closing clusters and pools, right after the mapping. Gets rid of the extra clean up step at the end of the function and the extra conditions. push st-bender travis-ci pending completion   set done
68 master regress: Don't extrapolate SZA (Linear) Extrapolating the solar zenith angles does not make sense. push st-bender travis-ci pending completion   set done
67 master regress: Add units for harmonic model parts Adds the missing units for the harmonic parts of the model. Used for the cli logging output logging and in the samples netcdf files. push st-bender travis-ci pending completion   set done
66 master regress: Document statistics interface Adds basic documentation to the MCMC statistics interface to describe at least the function parameters and the basic quantities. push st-bender travis-ci pending completion   set done