broadinstitute / catch / 17

Builds Branch Commit Type Ran Committer Via Coverage
17 custom-covg-fn Expose option to add a custom hybridization model This adds the argument --custom-hybridization-fn (and similarly for a tolerant version) to design.py, which allows a user to specify a function, that is dynamically loaded, to determine whether a ... Pull #14 web-flow travis-ci pending completion   set done
16 custom-covg-fn Expose option to add a custom hybridization model This adds the argument --custom-hybridization-fn (and similarly for a tolerant version) to design.py, which allows a user to specify a function, that is dynamically loaded, to determine whether a ... push haydenm travis-ci pending completion   set done
15 master Merge pull request #13 from broadinstitute/lsh Use locality-sensitive hashing to reduce space of candidate probes push web-flow travis-ci pending completion   set done
14 master Mention LSH options in README Pull #13 web-flow travis-ci pending completion   set done
13 lsh Mention LSH options in README push haydenm travis-ci pending completion   set done
12 lsh Add filter for near-duplicate probes using MinHash This filter is like the one using LSH based on Hamming distance, except this uses a family that constructs MinHash signatures. This commit adds an option to design.py for using this filter. The m... push haydenm travis-ci pending completion   set done
10 lsh Add filter for near-duplicate probes based on Hamming distance Like the duplicate filter, this is not necessary, but running it before the set cover filter can significantly lower runtime and reduce memory usage by decreasing the input size (numb... push haydenm travis-ci pending completion   set done
8 master Fix bug caused by not changing skip_reverse_complements to add_reverse_complements push haydenm travis-ci pending completion   set done
9 lsh Add filter for near-duplicate probes based on Hamming distance Like the duplicate filter, this is not necessary, but running it before the set cover filter can significantly lower runtime and reduce memory usage by decreasing the input size (numb... push haydenm travis-ci pending completion   set done
7 master Split Influenza A/B datasets into segments This splits the influenza_a and influenza_b data into separate files per segment. It keeps the original influenza_a and influenza_b datasets (across all segments) and also adds separate ones for each seg... push haydenm travis-ci pending completion   set done
6 master Add MIT as a copyright holder push haydenm travis-ci pending completion   set done
4 master Rename main executables to design.py and pool.py This also renames the make_probes_naively.py script to design_naively.py, and updates the setup script and README to account for the renaming. push haydenm travis-ci pending completion   set done
5 v1.0.0 Rename main executables to design.py and pool.py This also renames the make_probes_naively.py script to design_naively.py, and updates the setup script and README to account for the renaming. push haydenm travis-ci pending completion   set done
3 master Update coveralls configuration after making repo public The configuration for coveralls (in .coveralls.yml) should no longer be needed now that this repository is public. api haydenm travis-ci pending completion   set done
2 master Update coveralls configuration after making repo public The configuration for coveralls (in .coveralls.yml) should no longer be needed now that this repository is public. push haydenm travis-ci pending completion   set done