broadinstitute / catch / 272

Builds Branch Commit Type Ran Committer Via Coverage
272 speed-sc-setup Speed up construction of universe from IntervalSets set_cover.approx_multiuniverse() constructs the universes by taking the union over all input sets. When use_intervalsets is True, this was previously slow. (use_intervalsets is True for most run... Pull #21 web-flow travis-ci-com pending completion   set done
271 speed-sc-setup Speed up construction of universe from IntervalSets set_cover.approx_multiuniverse() constructs the universes by taking the union over all input sets. When use_intervalsets is True, this was previously slow. (use_intervalsets is True for most run... Pull #21 web-flow travis-ci-com pending completion   set done
270 speed-sc-setup Speed up construction of universe from IntervalSets set_cover.approx_multiuniverse() constructs the universes by taking the union over all input sets. When use_intervalsets is True, this was previously slow. (use_intervalsets is True for most run... push haydenm travis-ci-com pending completion   set done
269 master Cleanup git lfs tracking comments push haydenm travis-ci-com pending completion   set done
268 master <a href="https://github.com/broadinstitute/catch/commit/caa1d627e">Add probe sets designed to target Influenza A, B, and C viruses This adds two probe sets: one with 45,000 probes and another with 6,000 probes (twic... push haydenm travis-ci-com pending completion   set done
267 master Update design.py example in README This updates information (number of genomes and probe count) provided with the Zika virus example. push haydenm travis-ci-com pending completion   set done
265 master Merge pull request #20 from broadinstitute/require-output Require -o argument in design.py push web-flow travis-ci-com pending completion   set done
264 require-output Require -o argument in design.py Previously, the `-o/--output-probes` argument was optional. This could be desired if the goal was only to determine the number of probes: even if the probe set is designed in order to compute this number, one coul... Pull #20 web-flow travis-ci-com pending completion   set done
263 require-output Require -o argument in design.py Previously, the `-o/--output-probes` argument was optional. This could be desired if the goal was only to determine the number of probes: even if the probe set is designed in order to compute this number, one coul... push haydenm travis-ci-com pending completion   set done
262 master Add influenza_{a,b,c} to viruses_with_human_host collection The influenza_* datasets already existed, but were mistakenly left out of the latest version of the `viruses_with_human_host` collection (committed as part of b12cc14). This is because t... push haydenm travis-ci-com pending completion   set done
261 master Merge pull request #19 from broadinstitute/reduce-valueerrors Reduce use of ValueError push web-flow travis-ci-com pending completion   set done
260 reduce-valueerrors Reduce use of ValueError Some uses of ValueError were inappropriate. This generalizes most of them to be an Exception. Pull #19 web-flow travis-ci-com pending completion   set done
259 reduce-valueerrors Reduce use of ValueError Some uses of ValueError were inappropriate. This generalizes most of them to be an Exception. push haydenm travis-ci-com pending completion   set done
258 master Update year to 2019 in MIT License push haydenm travis-ci-com pending completion   set done
257 master Have --expand-n accept the maximum number of N bases to expand push haydenm travis-ci-com pending completion   set done