LoLab-VU / tropical / 229

Builds Branch Commit Type Ran Committer Via Coverage
229 new_api Updating pysb syntaxis in model push ortega2247 travis-ci pending completion   set done
228 new_api Added type_analysis parameter to class. This allows to obtain dominant paths of consumption or production of a species. Updated the visualization to see consumption or production. push ortega2247 travis-ci pending completion   set done
227 feature/global_conserved_species_analysis Added the relative_path_frequency_signatures function. push blakeaw travis-ci pending completion   set done
226 feature/global_conserved_species_analysis Added the function to compute species in path relative frequencies. Changed the name of the file and function names. push blakeaw travis-ci pending completion   set done
225 new_api Add sample_simulation parameter to get_path_signatures push ortega2247 travis-ci pending completion   set done
224 feature/global_conserved_species_analysis Moved the analysis function into separate file path_species_anlysis.py (unpolluting discretize_path). push blakeaw travis-ci pending completion   set done
223 feature/global_conserved_species_analysis Added the target species to the nodes for counting (although it should always be 1.0). push blakeaw travis-ci pending completion   set done
222 feature/global_conserved_species_analysis The function now automatically converts the species names from the s+index format to the the nice truncated form used in the graph visualizations. push blakeaw travis-ci pending completion   set done
221 feature/global_conserved_species_analysis Finished a first path of a conserved species analysis function using dominant paths and the path signatures. push blakeaw travis-ci pending completion   set done
220 new_api Added more documentation. Fixed label problem with dicts push ortega2247 travis-ci pending completion   set done
219 new_api Re encoded labels to avoid problems with the size of some labels push ortega2247 travis-ci pending completion   set done
218 new_api added anytree to travis push ortega2247 travis-ci pending completion   set done
214 new_api Removed unused functions. Added documentation. Sort nodes to obtain same results push ortega2247 travis-ci pending completion   set done
213 new_api Discretize_path file. and example in JNK3 push ortega2247 travis-ci pending completion   set done
212 new_api Dominant path analysis working. JNK3 example to get dominant paths push ortega2247 travis-ci pending completion   set done