LoLab-VU / tropical / 246

Builds Branch Commit Type Ran Committer Via Coverage
246 master Merge branch 'master' into new_api and keep new_api information as this branch is in a better state. push ortega2247 travis-ci pending completion   set done
245 feature/global_conserved_species_analysis calibrate double enzymatic model with pso and pydream. This comes from the merge that we did with the new_api branch push ortega2247 travis-ci pending completion   set done
244 feature/global_conserved_species_analysis Merge feature/global_conserved_species_analysis with new_api branch push ortega2247 travis-ci pending completion   set done
243 new_api Deleted outdated dynamic_signatures_range file and outdated all the examples to use discretize.py push ortega2247 travis-ci pending completion   set done
241 new_api simulated standard deviations. Deleted old simulations ans dynamic signatures push ortega2247 travis-ci pending completion   set done
242 new_api Run dynamic analysis push ortega2247 travis-ci pending completion   set done
240 new_api Pydream calibration of double enzymatic reaction model push ortega2247 travis-ci pending completion   set done
238 feature/global_conserved_species_analysis Use pandas to organize the results. Also, now we take the frequencies of the species at each time point. push ortega2247 travis-ci pending completion   set done
239 new_api pso calibration of double enzymatic reaction model push ortega2247 travis-ci pending completion   set done
237 new_api Take average of reaction rates per cluster and check if it is positive or negative to classify it in product reaction and reactant reactions. Added (0, 1) ylim to plot analysis push ortega2247 travis-ci pending completion   set done
236 new_api Added filename parameter to plot functions push ortega2247 travis-ci pending completion   set done
235 new_api Change width parameter value in bar function, to delete white spaces between bars push ortega2247 travis-ci pending completion   set done
234 new_api added networkx and pydot to travis file push ortega2247 travis-ci pending completion   set done
231 new_api Added nrows parameter to control size of text. Change order of title to give the name of a file. Added logic to use a sns color_palette if the number of unique states is higher than the number of unique colors push ortega2247 travis-ci pending completion   set done
230 new_api Added logic to avoid taking the log10 of zero push ortega2247 travis-ci pending completion   set done