bardin-lab / readtagger / 353

Builds Branch Commit Type Ran Committer Via Coverage
353 cluster_refinement Improve cluster-splitting by splitting out --presumable-- stray reads (if these do not contribute to any contig sequence) as separate cluster. Also add properly loggging for multiprocessing and add option to manually set max_proper_paire_distance. push mvdbeek travis-ci pending completion   set done
352 master Update planemo from 0.41.0 to 0.42.1 Pull #32 web-flow travis-ci pending completion   set done
350 pyup-update-planemo-0.41.0-to-0.42.1 Update planemo from 0.40.0 to 0.41.0 push mvdbeek travis-ci pending completion   set done
351 pyup-update-planemo-0.41.0-to-0.42.1 Update planemo from 0.41.0 to 0.42.1 push pyup-bot travis-ci pending completion   set done
349 cluster_refinement Only close FDS push mvdbeek travis-ci pending completion   set done
348 cluster_refinement Add warning if region is empty push mvdbeek travis-ci pending completion   set done
347 cluster_refinement Fail if any file does not exist ... push mvdbeek travis-ci pending completion   set done
346 cluster_refinement Possibly fix crash when merging bam files push mvdbeek travis-ci pending completion   set done
345 cluster_refinement Close filedescriptors and remove temporary files push mvdbeek travis-ci pending completion   set done
344 cluster_refinement Increase test-coverage and simplify name length parsing for chromosomes push mvdbeek travis-ci pending completion   set done
343 master Update planemo from 0.41.0 to 0.42.0 Pull #31 web-flow travis-ci pending completion   set done
341 pyup-update-planemo-0.41.0-to-0.42.0 Update planemo from 0.40.0 to 0.41.0 push mvdbeek travis-ci pending completion   set done
340 cluster_refinement Refine cluster splitting Previously a cluster of TE reads would be split if the orientation of reads would switch from Reverse to Forward (which should not happen if there is no closeby TE and no sequencing artefact caused wrong orientation of re... push mvdbeek travis-ci pending completion   set done
339 cluster_refinement Make imprecise insertion sites more realistic To estimate start and end of insertion site we add the max_proper_size distance starting from the leftmost start, or we subtract max_proper_size from the rightmost start. push mvdbeek travis-ci pending completion   set done
338 cluster_refinement Make imprecise insertion sites more realistic To estimate start and end of insertion site we add the max_proper_size distance starting from the leftmost start, or we subtract max_proper_size from the rightmost start. push mvdbeek travis-ci pending completion   set done