biologyguy / RD-MCL / 404

Builds Branch Commit Type Ran Committer Via Coverage
404 develop Include metadata when writing input sequences to rdmcl dir push biologyguy travis-ci pending completion   set done
403 develop Fix issue with record ID variable lengths Depending on the input, the ID and start position integer can take up a variable number of characters. So I can't hard-code the 20 positions I initially thought this information was contained in. push biologyguy travis-ci pending completion   set done
402 develop Merge branch 'develop' of https://github.com/biologyguy/RD-MCL into develop push biologyguy travis-ci pending completion   set done
401 develop Catch a couple more errors in rename_orthogroups Long file names and FileNotFound push biologyguy travis-ci pending completion   set done
400 develop New tool --> rename_orthogroup.py Allows the default 'group_0_XXX' name to be replaced. push biologyguy travis-ci pending completion   set done
399 develop New tool --> rename_orthogroup.py Allows the default 'group_0_XXX' name to be replaced. push biologyguy travis-ci pending completion   set done
398 develop Merge branch 'develop' of https://github.com/biologyguy/RD-MCL into develop push biologyguy travis-ci pending completion   set done
397 develop Set default output directory name to include unique ID MD5 hash the input sequences and the state of in_args, then append the first six characters to the directory name. push biologyguy travis-ci pending completion   set done
396 develop Write placement log output directly to file instead of building a string push biologyguy travis-ci pending completion   set done
395 develop Fix a unit test push biologyguy travis-ci pending completion   set done
394 develop Catch error when HMMER3 fails to build push biologyguy travis-ci pending completion   set done
393 develop Refactoring Just cleaning up variable/function names and rearranging. push biologyguy travis-ci pending completion   set done
392 develop Multicore most of place_sequence 10X speedup overall push biologyguy travis-ci pending completion   set done
391 develop Fix a bug with final collapsed paralog replacement Instead of looking in clust.collapsed_genes, go all the way back to group_0_cluster.collapsed_genes. Genes were being missed otherwise. push biologyguy travis-ci pending completion   set done
381 master Tutorial images push biologyguy travis-ci pending completion   set done