biologyguy / RD-MCL / 470

Builds	Branch	Commit	Type	Ran	Committer	Via	Coverage
470	develop	Update rdmcl unit test to account for tweek to scoring function	push	26 Apr 2018 03:25PM UTC	biologyguy	travis-ci	pending completion   set done
469	develop	(Manuscript) Fleshing out MCL parameter tuning	push	26 Apr 2018 03:22PM UTC	biologyguy	travis-ci	pending completion   set done
468	develop	(Manuscript) Adding rdmcl_scoring figure	push	25 Apr 2018 07:10PM UTC	biologyguy	travis-ci	pending completion   set done
467	develop	(Manuscript) Adding NLE and bit score sections and figures	push	25 Apr 2018 04:55PM UTC	biologyguy	travis-ci	pending completion   set done
466	develop	Apply square root to max-taxa scaling in dim_ret scoring function	push	17 Apr 2018 09:37PM UTC	biologyguy	travis-ci	pending completion   set done
465	develop	(Manuscript) New figure describing scoring function	push	17 Apr 2018 09:27PM UTC	biologyguy	travis-ci	pending completion   set done
464	develop	Reset Cluster.max_genes_in_a_taxa when calling Cluster.reset_seq_ids()	push	16 Apr 2018 10:02PM UTC	biologyguy	travis-ci	pending completion   set done
463	develop	Adjustment to diminishing returns score The dim ret base score is now pegged to the PARENT of the cluster being scored, not the cluster itself (unless it is a parentless cluster).	push	16 Apr 2018 05:09PM UTC	biologyguy	travis-ci	pending completion   set done
462	develop	Remove OpenBLAS thread limit. In retrospect, I think this is massively slowing down the runs.	push	12 Apr 2018 06:33PM UTC	biologyguy	travis-ci	pending completion   set done
461	develop	Allow MCMCMC to run with simulated annealing	push	10 Apr 2018 04:44PM UTC	biologyguy	travis-ci	pending completion   set done
460	develop	Add a progress tracker option to MCMCMC.run DynamicPrint object.	push	10 Apr 2018 02:59PM UTC	biologyguy	travis-ci	pending completion   set done
458	develop	(Manuscript) Reorder a few sections and remove some lipsum	push	09 Apr 2018 06:31PM UTC	biologyguy	travis-ci	pending completion   set done
456	develop	(Manuscript) Working on similarity metric section	push	07 Apr 2018 01:19PM UTC	biologyguy	travis-ci	pending completion   set done
455	develop	Properly update clusters in database after calculating sim_scores	push	06 Apr 2018 06:31PM UTC	biologyguy	travis-ci	pending completion   set done
454	develop	Properly test resumed run in rdmcl full run	push	06 Apr 2018 04:34PM UTC	biologyguy	travis-ci	pending completion   set done

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