biologyguy / RD-MCL / 61

Builds Branch Commit Type Ran Committer Via Coverage
61 master Add unit test for orthogroup_caller Requires a bunch of additional assets push biologyguy travis-ci pending completion   set done
60 master Unit test coverage for mcmcmc_mcl Adding a few more ss2 resource files and updating db.sqlite as well push biologyguy travis-ci pending completion   set done
59 master Remaining unit tests for RBHC Also split all the tests up into more manageable chunks. push biologyguy travis-ci pending completion   set done
58 master Flesh out orphan placement unit tests push biologyguy travis-ci pending completion   set done
57 master Unit test for Orphan object instantiation push biologyguy travis-ci pending completion   set done
56 master Underline Mnemiopsis sequences push biologyguy travis-ci pending completion   set done
53 master Add flag for sqlite database, supress_iteration and handle -scc and -ssf push biologyguy travis-ci pending completion   set done
52 master Fix bug in gene dropping and variable refactor Needed to call tree.collapse() and not tree.collapse_all() Variable names were a bit confusing, so update to something a little more sensical. push biologyguy travis-ci pending completion   set done
51 master Allow reuse of sqlite db and refactor Switch to one step CREATE and INSERT commands, instead of relying on subsequent UPDATE Rename a few database fields with non-protected keywords (`group` and `drop` were both in there...) In the process of all... push biologyguy travis-ci pending completion   set done
49 master Fix bug in clique analysis Scores among the sequences outside the clique was being included in the analysis, when only scores between clique memebers and non-clique members should be considered. push biologyguy travis-ci pending completion   set done
50 steve-dev Fix bug in clique analysis Scores among the sequences outside the clique was being included in the analysis, when only scores between clique memebers and non-clique members should be considered. push biologyguy travis-ci pending completion   set done
48 karl-dev Fix bug in clique analysis Scores among the sequences outside the clique was being included in the analysis, when only scores between clique memebers and non-clique members should be considered. push biologyguy travis-ci pending completion   set done
47 master Remove raw_score attributes - MCMCMC was using two sets of variables to monitor scores, but the 'raw_score' version was a hold over from something previous that is no longer being used. - Refactor out those variables - Also removed a call to nu... push biologyguy travis-ci pending completion   set done
46 master Overhaul scoring algorithm - No longer set a default score for single sequences. Treat them like a normal cluster from now on. - Calculate a raw score that now moves between 0 and ∞ - Include a factor that compares the cluster size to the overall... push biologyguy travis-ci pending completion   set done
45 master Compare final clusters against reference set Adding a new function that prints the seq ids in green or red right to the terminal window. push biologyguy travis-ci pending completion   set done