rcavalcante / annotatr / 18

Builds Branch Commit Type Ran Committer Via Coverage
18 master Add liftOver enhancers or hg38 and mm10 * Use rtracklayer::liftOver to lift FANTOM5 enhancers in hg19 and mm9 to h38 and mm10. * Update documentation and vignette. From: Raymond Cavalcante <cavalcante.raymond@gmail.com> git-svn-id: https://hedg... push r.cavalcante travis-ci pending completion   set done
16 v1.1.7 Change colors in plot_categorical() * Change instances of `scale_fill_brewer()` to `scale_fill_hue()`. `scale_fill_brewer()` has a limit of 9 categories, and in many cases, this is too few. push rcavalcante travis-ci pending completion   set done
15 master Change colors in plot_categorical() * Change instances of `scale_fill_brewer()` to `scale_fill_hue()`. `scale_fill_brewer()` has a limit of 9 categories, and in many cases, this is too few. push rcavalcante travis-ci pending completion   set done
14 v1.1.6 Remove build_annotation() tests * Take too long on remote build environments push rcavalcante travis-ci pending completion   set done
13 master Remove build_annotation() tests * Take too long on remote build environments push rcavalcante travis-ci pending completion   set done
10 v1.1.4 Add chromHMM annotations * Ability to annotate to any chromHMM chromatin states in any combination of the 9 cell lines for which they are available in hg19. * Shortcut codes are of the form hg19_Gm12878-chromatin, and class codes are of the form ... push rcavalcante travis-ci pending completion   set done
9 master Add chromHMM annotations * Ability to annotate to any chromHMM chromatin states in any combination of the 9 cell lines for which they are available in hg19. * Shortcut codes are of the form hg19_Gm12878-chromatin, and class codes are of the form ... push rcavalcante travis-ci pending completion   set done
7 master Add CpG annotations for hg38, mm10, rn6 * Since these are absent from AnnotationHub, use the UCSC goldenpath URL + readr (since not in BED format) to get them into annotation form. * Once I add these to AnnotationHub for next BioC release, will r... push rcavalcante travis-ci pending completion   set done
8 v1.1.3 Add CpG annotations for hg38, mm10, rn6 * Since these are absent from AnnotationHub, use the UCSC goldenpath URL + readr (since not in BED format) to get them into annotation form. * Once I add these to AnnotationHub for next BioC release, will r... push rcavalcante travis-ci pending completion   set done