angelolab
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main: 92%
main: 92%
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coverage: 93.368% (+0.2%) from 93.146%
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web-flowRename fov folders (#85) * setup rename_fovs * get fov names and scan counts * fix bool typo * get current folder names and counts for checking * add run file and existing directory check * actually changes folder names * add sort() for current dir names * option to copy to new directory and rename * alter fov_scan dictionary structure * assume new_dir is a full path * works when existing folders < run fovs * Revert "works when existing folders < run fovs" This reverts commit ca7907794. * works when existing folders < run fovs * update error and warning * fix warning * cleaning * rename fovs to default_name and custom_name * comments * edit error and warning calls * pycodestyle cleaning * add fov name key validation * edit error message * more pycodestyle rip * add warning and return if no folders need renaming * test and fix missing name keys * check new_dir doesn't already exist * raise error if folders have already been renamed * create test file * add test_check_unnamed_fovs() * add general function to create run metadata * edit example fov names * test if new directory * add assert & change 'missing' to None * add pytest.raises for new_dir check * remove comments * change 3 lists into data frame * comments * functions for creating and removing sample directories + testing already renamed dirs * check for missing or extra dirs compared to run file * fix minor errors * add test for bad run file * cleaning and assert successful renaming * change back to 3 lists and renames fov names as custom_1 * change helper function name * rename_missing_fovs() returns an edited copy of the * add deepcopy() for rename function * add rename_missing_fovs() to tma notebook * add rename_missing_fovs() to tiling_utils * fix rename test error Co-authored-by: Cami PC <camisowers@hotmail.com>
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