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master: 94%

Ran 07 Dec 2021 12:23AM UTC

Files 33

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Committed 07 Dec 2021 12:06AM UTC coverage: 93.614% (-1.0%) from 94.633%

Job # MPLBACKEND=Agg

Build Type

push

travis-ci-com

Committed by

web-flow

Commit Message

Add process to automatically download data from MIBItracker prior to QC analysis (#483)

* Add MIBItracker download process

* Add mibitracker utils file (just a copy paste from Ionpath)

* Remove unnecessary upload/update mibilib functions

* Add tests for MIBItracker download (notebook tests pending)

* Ionpath really doesn't know how to format their docstrings...

* More doc fixes

* Even more doc fixes

* Remove unneeded helper functions

* Remove MIBItiff support for QC metric evaluation and update notebook tests

* Remove mildly hilarious comment

* Add clarifying comment in notebooks_test.p

* Add clarifying notebook comments

* Add comment to path verification in qc_comp.py

* Fix typo in notebooks_test.py

* Address code review comments

* Assign tiff_dir a default value if not specified

* Reorganize templates in ark

* Update notebook_utils.py to reflect new templates structure

* Change directory structure of templates to one folder with ark stuff, and one with QC stuff

* Change sort function for QC metrics to acquisition order

* Try fixing the notebook tests

* Remove extra print statements

* Change notebooks_test.py to adjust for new templates directory structure

* Remove output = in notebook_test_update.py

* Add option to overwrite existing tiff_dir

Run Details

2287 of 2443 relevant lines covered (93.61%)

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angelolab / ark-analysis / 4341 / 1
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master: 94%

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angelolab / ark-analysis / 4341 / 1 94% master: 94%

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angelolab / ark-analysis / 4341 / 1
94%
master: 94%

README BADGES
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