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Ran 16 Jul 2021 09:15PM UTC

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Committed 16 Jul 2021 09:09PM UTC coverage: 99.375% (+0.01%) from 99.365%

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travis-ci-com

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web-flow

Commit Message

Optimize loading procedures in image segmentation notebook (#426)

* Initial commit

* Batch process data and add first stage of testing

* Add more tests

* Update notebook testing

* Fix PYCODESTYLE in data_utils_test.py

* Documentation fix

* Update ark/segmentation/marker_quantification.py

Co-authored-by: Noah F. Greenwald <noahfgreenwald@gmail.com>

* First comments addressed

* Update notebook tests and make sure channels in save_segmentation_mask becomes an np.array

* Remove segmentation_masks creation in marker_quantification_test.py

* Clarify parameter in generate_cell_table

* Fit bugs

* Add more descriptive tests for nuclear cell table checking

Co-authored-by: Noah F. Greenwald <noahfgreenwald@gmail.com>

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