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Ran 01 Sep 2015 04:50PM UTC

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Committed 01 Sep 2015 04:23PM UTC coverage: 61.167% (-0.08%) from 61.244%

Job # 1046.1

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push

travis-ci

Committed by

dpark01

Commit Message

Merge pull request #149 from broadinstitute/ct-multialign

This addresses issues #127, #133, #134, #135, and #136. It also includes the new functionality of being able to download FASTAs, feature tables, and full GenBank records via the Entrez REST API. This functionality is used in the new Snakemake rules to download the files required to make the reference genome, lastal database, and feature tables, all via GenBank accessions specified in the file config.json. It also adds new scripts related to running the Snakemake pipeline on the Broad Institute's Univa Grid Engine cluster ("UGER").

Coverage Stats

2873 of 4697 relevant lines covered (61.17%)

0.61 hits per line

broadinstitute / viral-ngs / 1046 / 1
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master: 23%

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broadinstitute / viral-ngs / 1046 / 1
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