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Ran 26 Apr 2021 07:06PM UTC

Files 31

Run time 16min

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Committed 26 Apr 2021 06:50PM UTC coverage: 86.034%. Remained the same

Job # 1488.1

Build Type

push

travis-ci-com

Committed by

cecileane

Commit Message

add measurement-error model for phylolm (#140)

continuous trait evolution:
* added option for within-species variation, in which case the species mean prediction (ancestral state reconstruction) is extended to tips with data
* added REML option, true by default (breaking change).
* deprecated: phyloNetworklm -> phylolm; sigma2_estim -> sigma2_phylo; mu_estim -> mu_phylo

also:
- renamed functions to generate networks & moved to new file, generate_topology.jl;
- new function to generate a star tree; corresponding tests added
- type to hold NLOpt and summarize optimization info, in nloptsummary.jl

Co-authored-by: Benjamin Teo
and contributions by Paul Bastide

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