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fix(diff): set option where for pacote

pacote expects a **where** option that sets the cwd for all its
operations, ref: https://github.com/npm/pacote#options

This change properly sets that option in libnpmdiff options that will
then properly forward it to pacote, this is specially important for when
reading local file system specs.

PR-URL: https://github.com/npm/cli/pull/2822
Credit: @ruyadorno
Close: #2822
Reviewed-by: @wraithgar

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