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Ran 18 Feb 2021 10:57PM UTC

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Committed 18 Feb 2021 10:51PM UTC coverage: 99.435% (+0.03%) from 99.403%

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Commit Message

Add framework for customizable morphology metrics (#378)

* Add initial setup for new morphology metrics

* Begin refactoring

* Refactor regionprops-specific functions into regionprops_extraction.py

* Add regionprops_extras into the testing, and set up stubs for testing intermediate regionprops functions

* Add basic testing framework with bug corrections

* Update ark/segmentation/regionprops_extraction.py

Co-authored-by: Noah Greenwald <noahfgreenwald@gmail.com>

* Add everything except for nc_ratio

* Add nuclear property calculations in

* Address code review renaming comments

* Remove unnecessary, erroneous line

* Remove old compute_extra_props test

* Update ark/segmentation/marker_quantification.py

Co-authored-by: Noah Greenwald <noahfgreenwald@gmail.com>

Co-authored-by: Noah Greenwald <noahfgreenwald@gmail.com>

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