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Ran 18 Feb 2021 12:52AM UTC

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Committed 18 Feb 2021 12:47AM UTC coverage: 98.085% (-1.3%) from 99.424%

Job # MPLBACKEND=Agg

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push

travis-ci-com

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web-flow

Commit Message

Add framework for subsetting SOM (#379)

* Initial commit of new subsetting strategy

* Finalize subsetting method

* Fix notebook testing for subsetted som

* Add a ton of testing

* Nuke references to point

* Add tables library to fix import errors, and fix PYCODESTYLE

* Remove MIBItiff tests for flowsom clustering and mock up cluster_pixels in notebook test to write to HDF5 file

* PYCODESTYLE

* Reorganize SOM

* Remove old functions and adjust notebook tests for new structure

* Correct typo

* Add next version of SOM

* Need to add feather to autodoc

* Documentation fix for cluster_pixels

* Documentation fix for train_som

* Add seed and num_passes default arguments

* Remove extraneous comments

* Address code review comments outside of the normalization

* Fix indentation in conf.py

* Address code review comments

* Nuke another h5py

Run Details

1229 of 1253 relevant lines covered (98.08%)

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angelolab / ark-analysis / 3277 / 1
92%
master: 94%

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Source Files on job 3277.1 (MPLBACKEND=Agg)

angelolab / ark-analysis / 3277 / 1 92% master: 94%

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Markdown

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Source Files on job 3277.1 (MPLBACKEND=Agg)

angelolab / ark-analysis / 3277 / 1
92%
master: 94%

README BADGES
x