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Ran 27 Jan 2021 10:26PM UTC

Files 20

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Committed 27 Jan 2021 10:21PM UTC coverage: 99.403% (-0.2%) from 99.559%

Job # MPLBACKEND=Agg

Build Type

push

travis-ci-com

Committed by

web-flow

Commit Message

Auto upload patch (#369)

* adds alternate deepcell call

* adds docstring to new deepcell api caller

* redirects mock in deepcell service testing

* adds argument to deepcell service mocker

* documentation fix

* sanitizes progressbar updates

* upgrades tqdm to notebook version

* testing readout from redis responce

* decodes url error text

* allows failures and better failure printing

* sends expire signal to redis (out of kindness to deepcell's servers)

* extends timeout on file upload

* empty commit for travis testing

* removes commented function call

* removes kiosk-client deepcell upload function

* distributes large zips for deepcell into smaller batches

* fixes error with range-int mult

* fixes zip auto-batching and connects zip_size argument

* parallelizes deepcell uploads

* changes parallelization strategy from processes to threads (due to non-picklability)

* makes parallelization optional

* converts map object to list to run processes

* removes kiosk-client requirement

* adds tests to validate zip batching, and corrects batching in 'no-overflow' case

* adds test for parallel uploads

* prevents race condition on file extraction

* replaces manual file deletion with context management in deepcell unit tests

* removes redundant warning context wrapper in deepcell upload batching test

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angelolab / ark-analysis / 3192 / 1
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angelolab / ark-analysis / 3192 / 1 94% master: 94%

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Source Files on job 3192.1 (MPLBACKEND=Agg)

angelolab / ark-analysis / 3192 / 1
94%
master: 94%

README BADGES
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