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improve preprocess logic and skip unneeded clones (#515)

* feat: skip visited nodes

* fix: remove uneeded clones

* fix: cleanup

* fix: remove yaml parse

* fix: remove merge

* fix: remove uneeded deps

* chore: beta

* fix: skip schemas

* fix: update path to $refs

* fix: visit ref and update deref path

* chore: comment

* test: add polymorphism test for #511

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1285 of 1355 relevant lines covered (94.83%)

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