shimming-toolbox / shimming-toolbox / 592 / 1
90%
master: 90%

DEFAULT BRANCH: master
Ran
Files 28
Run time 3s
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst
coverage: 89.889% (+0.9%) from 88.945%
592.1

push

travis-ci-com

web-flow 
Add ability to create fieldmaps (#169)

* Initial set up for CLI and test

* Add st_prepare_fieldmap as an entry_point

* Added comments and started to implement

* Added read_nii and echo_time_diff

* Now checking the input phase is a phase diff

For the "single-echo" case, which corresponds to phase diff input

* Added TODOs, added call to prelude, added unwrapper case

* Fixed wrong input for mag

* Deal with 4d phase data

* Divide by echo_time, output fieldmap, add support for 2d fieldmaps

* start implementing dual echo

* Seperate single and dual echo test

* Update dual echo method

* Add magnitude and remove unecessary debug lines

* Move unwrapper to seperate API

* Add unwrap_phase

* Add tests for unwrap_phase and update unwrap_phase to correct found errors

* Cleanup

* Transfer to an API

* Rename dli test to follow convention

* Add tests for prepare_fieldmap API and fix errors found with tests

* Add new tests for error handling

* Add comments

* Updated help

* Added TODO

* Minor comments

* Added integrity test for prepare fieldmap

* More intuitive if, and add NotImplementedError test

* Add and fix comments

* Add not implemented error

* Switch phasediff variable to phase_img

* Refactor unwrap_phase

* Fix merge with master, make mag optional in unwrap phase and prepare fieldmap and fix comments

Co-authored-by: Julien Cohen-Adad <jcohen@polymtl.ca>

809 of 900 relevant lines covered (89.89%)

0.9 hits per line

Source Files on job 592.1