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Tests: Clean up hierarchy of our own test modules

Our internal tests mostly predate support for nested modules
so that's why these are mostly flat and messy.
Re-structure them so that related tests are under the same
module. This makes it easier to scan the results and to re-run
tests in a given file.

Also:
* Use assert.test instead of QUnit.config.current where possible.
* Remove redundant use of assert.expect() from most tests.
* Remove some duplicate tests.
* Clarify local name in setTimeout.js as globalThis instead of
  window, since the test is used in Node.js as well.

Ref https://github.com/qunitjs/qunit/issues/1511.

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