broadinstitute / hellbender / 1140 / 1
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LAST BUILD BRANCH: dr_disentangle_spark_and_dataflow
DEFAULT BRANCH: master
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Files 406
Run time 60min
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coverage: 73.314% (+0.001%) from 73.313%
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davidadamsphd 
Adding coders and switching to our UUID solution for determinism.

More UUID stuff.

Adding more tests and Mockito.

Roughly finished up testing and a little cleanup.

A few more changes to the overall pipeline.

Adding something for DavidR :)

Test clean up.

Migrate code to new read interface

Cleaning up tests after rebase.

Source and test clean up.

A few more changes..

Conflicts:
	build.gradle
	src/main/java/org/broadinstitute/hellbender/utils/dataflow/DataflowUtils.java

Conflicts:
	src/main/java/org/broadinstitute/hellbender/dev/tools/walkers/bqsr/BaseRecalibratorDataflow.java
	src/main/java/org/broadinstitute/hellbender/engine/dataflow/coders/VariantCoder.java
	src/main/java/org/broadinstitute/hellbender/engine/dataflow/transforms/GoogleGenomicsReadToGATKRead.java
	src/main/java/org/broadinstitute/hellbender/tools/dataflow/pipelines/DataflowReadsPipeline.java
	src/main/java/org/broadinstitute/hellbender/utils/dataflow/DataflowUtils.java
	src/main/java/org/broadinstitute/hellbender/utils/read/ArtificialReadUtils.java
	src/test/java/org/broadinstitute/hellbender/engine/dataflow/ReadsDataflowSourceTest.java
	src/test/java/org/broadinstitute/hellbender/tools/dataflow/transforms/CountBasesTransformUnitTest.java
	src/test/java/org/broadinstitute/hellbender/tools/dataflow/transforms/PrintReadsTransformUnitTest.java
	src/test/java/org/broadinstitute/hellbender/utils/dataflow/DataflowUtilsUnitTest.java

15767 of 21506 relevant lines covered (73.31%)

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Source Files on job 1140.1 (TERM=dumb)