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Ran 27 Oct 2020 08:39PM UTC

Files 19

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Committed 27 Oct 2020 08:33PM UTC coverage: 93.876% (+0.01%) from 93.863%

Job # MPLBACKEND=Agg

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push

travis-ci-com

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web-flow

Commit Message

Remove .tif/.tiff extension from list_files for MIBItiff reading in Segment_Image_Data.ipynb (#281)

* Add method to split delimited files from MIBItiff reading

* Need to add the actual file exts to this

* Hacky fix for MIBItiff loading

* See if removing setup.py install fixes the issue we've been having

* Move logic from Segment_Image_Data to deepcell_service_utils

* Better (?) way of handling .tif removing?

* Add comments to create_deepcell_output and add mixed fov name/file list to tests

* Fix typo: existant to existent

Co-authored-by: Noah Greenwald <noahfgreenwald@gmail.com>

* Remove extra slash from comment

Co-authored-by: Noah Greenwald <noahfgreenwald@gmail.com>

* Remove extra check for whether .tif file exists

* Fix typo and make sure we're handling both .tif and .tiff files when verifying fovs in deepcell_input_dir

* Fix comments

* Don't remove .zip file after creation, and make sure to handle mixed case of .tif and .tiff files

* Explicitly print out error message that zip file is being overwritten

Co-authored-by: Noah Greenwald <noahfgreenwald@gmail.com>

Run Details

1349 of 1437 relevant lines covered (93.88%)

0.94 hits per line

angelolab / ark-analysis / 2421 / 1
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master: 94%

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angelolab / ark-analysis / 2421 / 1 94% master: 94%

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angelolab / ark-analysis / 2421 / 1
94%
master: 94%

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