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Pull #458

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Pull Request #458: FIX various fixes for deprecations in numpy, scipy, sphinx

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Source Files on job 520.4 (DEPENDS="numpy scipy sympy<1.6 matplotlib nibabel" EXTRA_WHEELS="https://5cf40426d9f06eb7461d-6fe47d9331aba7cd62fc36c7196769e4.ssl.cf2.rackcdn.com" PRE_WHEELS="https://7933911d6844c6c53a7d-47bd50c35cd79bd838daf386af554a83.ssl.cf2.rackcdn.com" EXTRA_PIP_FLAGS="--find-links=$EXTRA_WHEELS" PRE_PIP_FLAGS="--pre $EXTRA_PIP_FLAGS --find-links $PRE_WHEELS" INSTALL_TYPE="pip" COVERAGE=1)