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SainsburyWellcomeCentre / cellfinder / 346 / 2
78%
master: 78%

Build:
DEFAULT BRANCH: master
Ran 06 Oct 2020 10:52AM UTC
Files 46
Run time 8s
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06 Oct 2020 10:38AM UTC coverage: 77.401% (+8.1%) from 69.29%
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brainreg integration (#142)

* Update dependencies

* lint


* add brainreg registration

* continue brainreg integration

* refactor

* remove group summary

* remove amap references

* remove unused tests

* add reg test

* remove unused code

* remove unused code

* update whattorun

* remove heatmap

* remove neuro depedency

* remove brainio

* remove dependencies

* remove unused code

* update linting

* refactor

* save points

* save points to single directory

* add heatmap

* update summary csv saving

* remove option to save relative structure centres when splitting

* deal with no cells being detected

* update skipping of cell candidate dependent steps

* save json

* remove unused code

* update test scripts

* update reqs

* Update testing

* update requirements

* update testing

* update deployment

* update logging of metadata

* Update testing

* update registration test

1596 of 2062 relevant lines covered (77.4%)

0.77 hits per line

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