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[PRED-4335] Script deprecation (#175)

* PRED-4338 Updated README.rst

* PRED-4336 Added deprecation warning to setup.py

* PRED-4337 Added deprecation warning message to runtime

* Sorry, flake8

* Typo

* Fixing restructured text bug

577 of 806 branches covered (71.59%)

1806 of 2176 relevant lines covered (83.0%)

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Source Files on job 1690.4