1
53%
master: 53%

Ran 04 Sep 2020 08:37PM UTC

Files 51

Run time 12s

Badge

Committed 04 Sep 2020 07:44PM UTC coverage: 59.639% (+0.03%) from 59.611%

Job # PGPORT=5433 BOTO_CONFIG=/bogus PATH="/usr/share/elasticsearch/bin:/usr/lib/postgresql/11/bin:$PATH" ELASTIC_BEANSTALK_LABEL=$TRAVIS_COMMIT USER="4dn-dcic" SNO_REPO="snovault"

Build Type

push

travis-ci

Committed by

web-flow

Commit Message

C4-294 Named Genotype Label Fields (#200)

* C4-196 intermediate update

* Schema and types file

* test inserts

* add demo_inserts

* less gene lists for demo

* update uuid

* update mapping

* add default filter set for case

* add gene list digester

* update delimiters and attachment type

* add ensemble look up

* add xls xlsx

* small changes in support of moving to es6

* add poetry.lock back

* C4-196 ES6 compatible cgap

* C4-294 add sample_id to genotype labels

* C4-294 clean up, spec out calc prop

* C4-294 first pass, always proband centric view

* add omitted items() call

* add tests

* update versions and add pandas

* add more tests

* Commented out test for genelist processing

* default values in calc prop

* rip out es6 compat changes from this branch

* add revlink and test

* add demo insert

* remove duplicates

* fix type

* remove ingester

* C4-294 mapping table update + genotype label facets

* remove pandas

* resolve lock file

* C4-294 scrub label

* fix cmphet, fix test

Co-authored-by: Koray Kırlı <koray_kirli@hms.harvard.edu>

Run Details

1985 of 3372 branches covered (58.87%)

Branch coverage included in aggregate %.

4029 of 6712 relevant lines covered (60.03%)

0.6 hits per line

Source Files on job 2579.1 (PGPORT=5433 BOTO_CONFIG=/bogus PATH="/usr/share/elasticsearch/bin:/usr/lib/postgresql/11/bin:$PATH" ELASTIC_BEANSTALK_LABEL=$TRAVIS_COMMIT USER="4dn-dcic" SNO_REPO="snovault")

dbmi-bgm / cgap-portal / 2579 / 1
53%
master: 53%

README BADGES
x

Markdown

Textile

RDoc

HTML

Rst

Source Files on job 2579.1 (PGPORT=5433 BOTO_CONFIG=/bogus PATH="/usr/share/elasticsearch/bin:/usr/lib/postgresql/11/bin:$PATH" ELASTIC_BEANSTALK_LABEL=$TRAVIS_COMMIT USER="4dn-dcic" SNO_REPO="snovault")

dbmi-bgm / cgap-portal / 2579 / 1 53% master: 53%

README BADGES x

Markdown

Textile

RDoc

HTML

Rst

Source Files on job 2579.1 (PGPORT=5433 BOTO_CONFIG=/bogus PATH="/usr/share/elasticsearch/bin:/usr/lib/postgresql/11/bin:$PATH" ELASTIC_BEANSTALK_LABEL=$TRAVIS_COMMIT USER="4dn-dcic" SNO_REPO="snovault")

dbmi-bgm / cgap-portal / 2579 / 1
53%
master: 53%

README BADGES
x