angelolab / ark-analysis / 1284 / 1
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Line length fix (#196)

* disable ignore E501 in pytest.ini

* fixed line length errors in analysis folder

* undid mega tabs in analysis

* full google style guidification of docstings in analysis

* line length fixes in segmentation + some docstring revions

* removed line length errors in utils

* fixed statsmodels import error and corrected calc_dist_matrix docstring

* added more accurate type info to docstrings

* fixed return+type docstrings

* fixed mislabeled types in utils files

* added pandas to intersphinx autodoc

* updated testing tools

* fixed tox.ini keyword

* add skip explainations to style testing

* correct capitalization and test md in return docstring

* test return docstring

* another docstring test

* test new returns: docstring standard

* test codeblock in docstring

* another codeblock test

* add markdown coversion to docstrings

* another try at return docstrings in spatial analysis

* forgot to save and then commit

* restyled md in docstring

* prevent accidental indented codeblocks

* praying for correct formating

* last attempt at md fix

* undid md to rst in docstrings and editted analysis+segmentation

* switch mds to rsts (might be causeing some doc skips)

* undid md to rst

* mock mibidata imports so data_utils and marker_quant get built

* added doclink to readme and standardized return docstrings

* apply Noah's formatting recommendations

* fix transform_expression_matrix docstring

* removed redunant description on tupled return docstrings

Co-authored-by: ackagel <kagelosaurus@gmail.com>
Co-authored-by: Noah Greenwald <noahfgreenwald@gmail.com>

820 of 923 relevant lines covered (88.84%)

0.89 hits per line

Source Files on job 1284.1 (MPLBACKEND=Agg)