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master: 81%

Ran 09 Aug 2020 05:10PM UTC

Files 13

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Committed 09 Aug 2020 05:05PM UTC coverage: 78.709% (+0.6%) from 78.143%

Job # MPLBACKEND=Agg

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push

travis-ci-com

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web-flow

Commit Message

io_utils update (#154)

* added functions to io_utils

* added io_utils functions to data_utils

* added io_utils functions to segmentation_utils

* enforced substrs as file extensions in data_utils

* fixed delimiting problems

* fixed typo in seg utils and made name_extractor None compatible

* added io_utils test function skeletons

* filled in test functions

* updated docstring on name extractor

* updated existing docstrings in data_utils

* fixed pep8 line lengths

* removed redundant astype call

* moved validate_paths to io_utils

* renamed xarray type in docstrings and reset delimiter defaults to None

* changed imgs arg to channels and encorporated recent changes into notebooks

* refactored io_util test functions

* small seg utils refactor

* fix data_utils tests delimiter defaulting changes

* changes to data_utils and postprocessing nb to address issue #147

* optimized io_utils matching

* refactored for pep8 line length compliance

* fix typo in postprocessing nb and update spatial analysis nb

* updated preprocessing nb with seg util changes

Co-authored-by: ackagel <kagelosaurus@gmail.com>

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angelolab / segmentation / 935 / 1
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