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COMPILER_CC=gcc-4.8 COMPILER_CXX=g++-4.8 COMPILER_FC=gfortran-4.8 TRAVIS_HOME=`pwd` BUILD_SHARED_LIBS=ON ENABLE_COVERAGE=ON ENABLE_MPI=ON ENABLE_DOCS=ON ENABLE_SILO=ON ENABLE_ADIOS=OFF ENABLE_PYTHON=ON PYTHON_VERSION=2.7.14 CMAKE_VERSION=3.9.4 BLT_CXX_STD=c++11

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Refactor Polygonal / Polyhedral Layout (#579)

* For polygonal topology, modify verify(), to_polygonal(), generate_offsets()

* Modify polytess generation for polygonal topology

* Modify basic_polygons example for polygonal topology

* Modify generate_X functions for polygonal topology

* Modify TopologyMetaData and centroid calculations for polygonal topology

* Add polygonal verify for multiple shape topology

* polyhedral verify(), to_polygonal(), generate_offsets()

* Modify basic_polyhedral example for polyhedral topology

* Add polyhedral verify for multiple shape topology

* Modify transform checks for polyhedral topology

* Modify generate_offsets() for polyhedral

* Modify centroid calculations for polyhedral topology

* Modify TopologyMetaData and generate_corners() for polyhedral topology

* Modify log validation for polyhedral in mixed unstructured topology

* * Revised the top-level documentation associated with polygonal/polyhedral topology specification.

* Remove commented-out workarounds

* Name temp node for temporary data

* Cleanup indentation

* Remove size and offset variable requirements for polyhedral topology

* Refactor polygonal/polyhedral verify

* Remove optional offset variable from unstructured non-poly verify()

Co-authored-by: Joseph Ciurej <ciurej1@llnl.gov>

13954 of 16048 relevant lines covered (86.95%)

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Source Files on job 2471.1 (COMPILER_CC=gcc-4.8 COMPILER_CXX=g++-4.8 COMPILER_FC=gfortran-4.8 TRAVIS_HOME=`pwd` BUILD_SHARED_LIBS=ON ENABLE_COVERAGE=ON ENABLE_MPI=ON ENABLE_DOCS=ON ENABLE_SILO=ON ENABLE_ADIOS=OFF ENABLE_PYTHON=ON PYTHON_VERSION=2.7.14 CMAKE_VERSION=3.9.4 BLT_CXX_STD=c++11)