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Get --add-source working for dirs in Gradle builds (#2156)

* Switch to using Gradle srcDir props for extra source dirs.

* Add warning about only supporting source dir includes with gradle.

* Fixed typos in gradle source directory warning

Co-authored-by: Alexander Taylor <alexanderjohntaylor@gmail.com>

794 of 1726 branches covered (46.0%)

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4024 of 6233 relevant lines covered (64.56%)

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Source Files on job 2334.2 (TOXENV=py3)