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<a href="https://github.com/SainsburyWellcomeCentre/amap-python/commit/<a class=hub.com/SainsburyWellcomeCentre/amap-python/commit/<a class="double-link" href="https://git"><a class=hub.com/SainsburyWellcomeCentre/amap-python/commit/b621fb2f46ddeecf3991ac977f52738574045cc6">b621fb2f4<a href="https://github.com/SainsburyWellcomeCentre/amap-python/commit/b621fb2f46ddeecf3991ac977f52738574045cc6">&lt;a href=&quot;https://github.com/SainsburyWellcomeCentre/amap-python/commit/b621fb2f46ddeecf3991ac977f52738574045cc6&quot;&gt;&amp;quot;&amp;gt;Download path refactor (#44)

* bump

* Reformatting out os dependencies using pathlib; removed download.atlas b/c of duplicate module name and argument from download

* Fix to dowloading the reference from the main run

* Hopefully fixing path error for atlas

* removing data

* copying again files from upstream master

* removing output files

* Added new results of transformation

* Checking out registration output folder from origin/master

* finishing moving back master files

* trying get_fdata vs get_data

* removing get_data keeping correct reference datatype

* ugly temporary fix to avoid 10um res atlas being downloaded in tests even if registration_config argument is passed

* fix for volumes test

* Revert &amp;quot;fix for volumes test&amp;quot;

This reverts commit &lt;/a&gt;&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/SainsburyWellcomeCentre/amap-python/commit/&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/SainsburyWellcomeCentre/amap-python/commit/082c960c913b12ed0af5454e43520a9289ae3dd4&quot;&gt;082c960c9&lt;/a&gt;&quot;&gt;082c960c9&lt;/a&gt;&lt;a href=&quot;https://github.com/SainsburyWellcomeCentre/amap-python/commit/b621fb2f46ddeecf3991ac977f52738574045cc6">.

* Revert &quot;ugly temporary fix to avoid 10um res atlas being downloaded in tests even if registration_config argument is passed&quot;

This reverts commit </a><a class="double-link" href="https://github.com/SainsburyWellcomeCentre/amap-python/commit/<a class="double-link" href="https://github.com/SainsburyWellcomeCentre/amap-python/commit/1c21c39296e51d72a7c2c8b471093f756e00eb68">1c21c3929</a>">1c21c3929</a><a href="https://github.com/SainsburyWellcomeCentre/amap-python/commit/b621fb2f46ddeecf3991ac977f52738574045cc6">.

* removed leftover config file

* Fixing 10um download in test, added conftest file, argumen can be passed to check_atlas_install

* Fixed volumes file - area names might be wrong

* black formatting

Co-authored-by: Adam Tyson <adam.tyson@ucl.ac.uk>

680 of 772 relevant lines covered (88.08%)

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Source Files on job 183.2 (PIP_CMD='pip install -e .[dev]' TEST_CMD='tests/travis/testing.sh')