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Ran 14 May 2015 07:52PM UTC

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Committed 14 May 2015 07:43PM UTC coverage: 100.0%. Remained the same

Job # 16.1

Build Type

push

travis-ci

Committed by

tomkinsc

Commit Message

integration of selscan into common command line interface

integration of selscan into common command line interface.
selscan_file_conversion command also added to take a compressed 1000G
Phase3 VCF and generate a compressed tped file of the sort expected by
selscan. There are command line flags to have it include multi-allelic
variants (breaking them out into separate records), to include/exclude
low-qual ancestral calls, and filter the haplotypes by population or
super_pop (by saying —filterPops FIN GBR, for example). It also exposes
commands to run selscan’s EHH, iHS, and XPEHH.

Run Details

5 of 5 relevant lines covered (100.0%)

1.0 hits per line

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