Ensembl / ensembl-compara / 6438 / 3

37%

release/98: 63%

cron

travis-ci

<a href="https://github.com/Ensembl/ensembl-compara/commit/<a class=hub.com/Ensembl/ensembl-compara/commit/5cda55e724ba93aef96400224ee014e875e4c089">5cda55e72<a href="https://github.com/Ensembl/ensembl-compara/commit/5cda55e724ba93aef96400224ee014e875e4c089">&quot;&gt;Merge branch &amp;#39;release/100&amp;#39;

* release/100: (38 commits)
  Copyright update 2020
  Need 8Gb for the biggest genomes
  The code actually looks way simpler without the iterator, and the memory usage isn&amp;#39;t very different
  Disconnect from the anchor database when the search is done
  This is a required parameter
  Can reduce the batch size a bit
  Batch the anchor_ids by number of sequence to make the runtime of the map_anchors* jobs more homogeneous
  Don&amp;#39;t start exonerate if the anchor file is empty
  Adjusted the memory requirements
  bugfix: the runnable expects &amp;quot;_range_list&amp;quot;
  500 works for fish too
  Only delete the existing mappings once it has reached write_output
  Simpler way of naming the file
  Rename the variable
  This filter is now in the anchor generation pipeline
  Reintroduced a filter on the number of sequences in the anchor
  These two parameters are only needed in this analysis
  The value used is just 2, which is the natural minimum for alignments
  This parameter is not used here since </a><a class="double-link" href="https://github.com/Ensembl/ensembl-compara/commit/<a class="double-link" href="https://github.com/Ensembl/ensembl-compara/commit/7aaa1282a15be7528409042aa60bbde5fd732e35">7aaa1282a</a>">7aaa1282a</a><a href="https://github.com/Ensembl/ensembl-compara/commit/5cda55e724ba93aef96400224ee014e875e4c089">
  Comment update
  ...

12974 of 20426 relevant lines covered (63.52%)

777.72 hits per line