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Preserve git notes on patch modifications

Such modifications include patch refreshing, editing, rebasing, moving
into a different position in the stack. In addition, modify some of the
tests to check for the preservation of the git notes.

Signed-off-by: Catalin Marinas <catalin.marinas@gmail.com>

1987 of 2362 branches covered (84.12%)

Branch coverage included in aggregate %.

5628 of 6231 relevant lines covered (90.32%)

0.9 hits per line