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Preserve git notes on patch modifications

Such modifications include patch refreshing, editing, rebasing, moving
into a different position in the stack. In addition, modify some of the
tests to check for the preservation of the git notes.

Signed-off-by: Catalin Marinas <catalin.marinas@gmail.com>

2342 of 2700 branches covered (86.74%)

Branch coverage included in aggregate %.

5731 of 6301 relevant lines covered (90.95%)

0.91 hits per line